Hi everybody, I have a problem with my Ensembl ID after running DESEq2 (I'm using hg38 genome):
dds <- DESeq(ds_matrix) res <- results(dds) baseMean log2FoldChange lfcSE stat pvalue padj ENSG00000176124.11 168.67880 4.991104 0.2797296 17.842601 3.299728e-71 6.057971e-67
As you could see, the identifiers are ENSG00000176124.11, for example, so when I've tried to annotate the genes using,
library("AnnotationDbi") library("org.Hs.eg.db") res$symbol <- mapIds(org.Hs.eg.db, keys = row.names(res), column = "SYMBOL", keytype = "ENSEMBL", multiVals = "first")
or using gage, the ID with the dots and the number after it are not recognized and can be match. So does anyone know how to deal with this problem?