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7.0 years ago
onemore100iq
▴
20
how to generate depth for all positions on chromosome_3 for specific strain bam.file and relate it to the full length of chromosome_3 in its reference genome which has length of 10039875.
this is what i wrote and did not work:
samtools depth -a chromosome_3:0-10089875 starin bamfile.bam
it gave me error message " could not open "chromosome_3:0-10089875" no such file or directory"
any help please.
Thanks