Question: Is there any REST API for the tree view result of the NCBI Blast?
gravatar for m.koohi.m
21 months ago by
United States
m.koohi.m110 wrote:

Hi there,

Using Biopython API I can blast my query seq against NCBI database and get the result same as bellow:

from Bio.Blast import NCBIWWW
result_handle = NCBIWWW.qblast("blastn", "nt", 'gagtctcctttggaactctgcaggttctatttgctttttcccagatgagctctttttctggtgtttgtct')

Now I need the tree view of the result which is produced by NCBI [Distance tree of results] section (i.e bellow image):

I am wondering is there any REST API to get the tree view result or there is any other python library or tools which be used to generate this tree?

Thank you,

NCBI Tree Result

blast biopython python ncbi • 602 views
ADD COMMENTlink modified 21 months ago • written 21 months ago by m.koohi.m110
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1326 users visited in the last hour