Hi Francesco, I am looking for annotation of my denovo assembled genomic data. I have good experience with Annocript for transcriptomic data annotation. Could we use the Annocript for genomic data annotation and suggest me tools like Annocript do, for whole genome annotation.
Dear Ranjeet, Currently I am working on annotation part of de novo assembled genome. I am using MAKER pipeline. It provides multiple tools to generate complete annotation (almost) and output in different formats starting from GFF3 and also has many supporting scripts such as converting MAKER output to Jbrowse compatible tracks. Here is the link for MAKER tutorial "http://weatherby.genetics.utah.edu/MAKER/wiki/index.php/MAKER_Tutorial_for_GMOD_Online_Training_2014"
commented on this link "C: Annocript: completely automated transcriptome annotation pipeline which can also"