Question: Annotation for denovo genomic data
0
gravatar for ranjeet_maurya
2.7 years ago by
New Delhi, IN
ranjeet_maurya0 wrote:

Hi Francesco, I am looking for annotation of my denovo assembled genomic data. I have good experience with Annocript for transcriptomic data annotation. Could we use the Annocript for genomic data annotation and suggest me tools like Annocript do, for whole genome annotation.

gene genome • 946 views
ADD COMMENTlink modified 2.7 years ago by Puli Chandramouli Reddy190 • written 2.7 years ago by ranjeet_maurya0
0
gravatar for Puli Chandramouli Reddy
2.7 years ago by
Pune, India
Puli Chandramouli Reddy190 wrote:

Dear Ranjeet, Currently I am working on annotation part of de novo assembled genome. I am using MAKER pipeline. It provides multiple tools to generate complete annotation (almost) and output in different formats starting from GFF3 and also has many supporting scripts such as converting MAKER output to Jbrowse compatible tracks. Here is the link for MAKER tutorial "http://weatherby.genetics.utah.edu/MAKER/wiki/index.php/MAKER_Tutorial_for_GMOD_Online_Training_2014"

commented on this link "C: Annocript: completely automated transcriptome annotation pipeline which can also"

ADD COMMENTlink written 2.7 years ago by Puli Chandramouli Reddy190

thank you puli for your help and advise, much appreciated.

ADD REPLYlink modified 2.6 years ago • written 2.6 years ago by ranjeet_maurya0
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