Question: cBioPortal Z-score: value difference between download and web Portal
0
gravatar for faswad
17 months ago by
faswad0
faswad0 wrote:

I am using the cBioPortal R library (cgdsr) to download data from cBioPortal. I am currently focused on the z-score mRNA expression data. For a given sample and gene combination, the z-score that is downloaded does not match the one on the web version of cBioPortal. Could someone shed light on why there is a difference?

Thank you.

cbioportal tcga mrna • 706 views
ADD COMMENTlink written 17 months ago by faswad0

Are you sure that you are accessing the exact same study in both R and on the cBioPortal website? Some of the TCGA studies are 'provisional' and have different numbers of samples from the published versions.

ADD REPLYlink written 17 months ago by Kevin Blighe41k
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