Pathways visualization for GSEA table input in ClusterProfiler package of Bioconductor
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3.9 years ago

ClusterProfiler package: Can I coerce an already generated GSEA results table as a enrichResults object and use it for visualization?

ClusterProfiler bioconductor • 1.5k views
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Hello More than 2 years after, is the answer still available ? Are you working on a function :D I have data already analyzed with GSEA results and I really want to use enrichplot to do my graphs. I think it's pity I can't use enrichplot to represent my data.

Thank you

Emilie

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3.9 years ago
Guangchuang Yu ★ 2.5k

clusterProfiler supports GSEA analysis and do provide several visualization methods for GSEA results.

If you want to coerce results from other software, there is not such conversion utilities provided.

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