migmap.jar com.antigenomics.migmap.MergeContigs Question

Question

[U]

I am using migmap-1.0.2 jar file for analysis but not sure how to run com.antigenomics.migmap.MergeContigs

Obviously there is no SRC files in this download hence cannot access these build files. So is the alternative to download source codes from github and do a gradle build ?

Answer 1

[Pierre Lindenbaum]

try:

java -cp  migmap-1.0.2 jar com.antigenomics.migmap.MergeContigs

[Pierre Lindenbaum]

(later) a quick google ... -> https://github.com/mikessh/migmap

java -cp migmap.jar com.antigenomics.migmap.MergeContigs out.txt out_merged.txt

[U]

This is the results

   migmap-1.0.2$ java -cp  migmap-1.0.2 jar com.antigenomics.migmap.MergeContigs
    Error: Could not find or load main class jar

I am not sure if I should download the source from github and gradle build it to let this class load

[U]

I stand corrected it works. Thanks