Genome Snp Annotation for non human
0
0
Entering edit mode
6.5 years ago
ARich ▴ 130

Hi, I am using snpeff for annotation of Candida albicans. For RefSeq genome the snpeff annotation worked well. Now I am using different source for genome http://www.candidagenome.org/download/sequence/C_albicans_SC5314/Assembly22/current/ and SnpEff is not working. With this genome I am not able to annotate the SNPs.

Looking forward for some advice.
SNP genome • 1.6k views
ADD COMMENT •
1
Entering edit mode

You can build your own Candida database. Follow the directions here (section 10.6.2.)

ADD REPLY •
0
Entering edit mode

Thank you for the reply I will try this

ADD REPLY •

Login before adding your answer.

Similar Posts
Loading Similar Posts
Traffic: 2685 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6