WGCNA input from deseq2
0
0
Entering edit mode
6.5 years ago
1769mkc ★ 1.2k

I m trying to do co-expression analysis with WGCNA , so im running deseq2 , so far im using this vst <- getVarianceStabilizedData(dds) to give as input for WGCNA , but im getting "c stack memory issues" , it looks like my input is too big as of now. How do i filter data and give them as input .

I have 5 different cell lineage such as HSC, CMP ,GMP ,Monocytes and Granulocyte rna seq data so from this i want to make co-expression network, whether my approach is correct or am i doing something wrong?

R RNA-Seq • 3.2k views
ADD COMMENT

Login before adding your answer.

Traffic: 1792 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6