Dear All, I have few tumor data to screen out the true copy number variation analysis. I used CNVKIT for CN analysis with default parameters and I further, used cnvkit-gainloss function with Log2 threshold 0.6 for further filter out the low-level CN segments. But when I use this segment file for GISTIC run, it showing an error "several overlaps segments found". How can I fix this problem? Your great help is highly appreciated. Thanks in advance.
Question: GISTIC-segmentation overlaps error
2.5 years ago by
rbaranikumar • 0
rbaranikumar • 0 wrote:
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