Question: mummer results merging
0
gravatar for Ric
3.1 years ago by
Ric330
Australia
Ric330 wrote:

Hi, I splited my assembly into 200 parts (part1.fasta - part199.fasta) and ran nucmer -p test pseudochromosome-1-11.fasta part1.fasta. As result I got the following extensions:

  • *.delta
  • *.ntref
  • *.mgaps

How should I merge the 200 results into one alignment?

Thank you in advance.

nucmer mummer • 1.0k views
ADD COMMENTlink written 3.1 years ago by Ric330

I think that is the solution: sed 1,2d BAFB.contigs.clean.*.delta > BAFB.contigs.clean.delta

ADD REPLYlink written 3.1 years ago by Ric330

I got ERROR: Could not parse delta file, BAFB.contigs.clean.delta error no: 400 with show-coords BAFB.contigs.clean.delta > Scaffold.coords

ADD REPLYlink written 3.1 years ago by Ric330
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