Entering edit mode
6.4 years ago
Ric
▴
430
Hi, I splited my assembly into 200 parts (part1.fasta - part199.fasta) and ran nucmer -p test pseudochromosome-1-11.fasta part1.fasta. As result I got the following extensions:
- *.delta
- *.ntref
- *.mgaps
How should I merge the 200 results into one alignment?
Thank you in advance.
I think that is the solution:
sed 1,2d BAFB.contigs.clean.*.delta > BAFB.contigs.clean.delta
I got
ERROR: Could not parse delta file, BAFB.contigs.clean.delta error no: 400
withshow-coords BAFB.contigs.clean.delta > Scaffold.coords