mummer results merging
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4.1 years ago
Ric ▴ 370

Hi, I splited my assembly into 200 parts (part1.fasta - part199.fasta) and ran nucmer -p test pseudochromosome-1-11.fasta part1.fasta. As result I got the following extensions:

  • *.delta
  • *.ntref
  • *.mgaps

How should I merge the 200 results into one alignment?

Thank you in advance.

mummer nucmer • 1.3k views
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I think that is the solution: sed 1,2d BAFB.contigs.clean.*.delta > BAFB.contigs.clean.delta

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I got ERROR: Could not parse delta file, BAFB.contigs.clean.delta error no: 400 with show-coords BAFB.contigs.clean.delta > Scaffold.coords

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