Parente2 vs IBD-Groupon vs MCMC_IBDfinder: identity by descent (IBD) inference

Question

[Shicheng Guo]

Hey my colleagues,

Which algorithms is the best method to be applied for IBD regions (identity by descent) inference?

SpeeDB

Parente2

IBD-Groupon

MCMC_IBDfinder

BEAGLE's fastIBD

PLINK

SNPRelate

GERMLINE

BEAGLE (fastIBD)

HaploShare

HapFABIA

GraphIBD

EMI Efficient Multiple-IBD

DASH DASH Associates Shared Haplotypes

CrypticIBDcheck

Thanks.

[trutane]

What type of data are you working with: microarray, exome, WGS?