Question: Which Enhancer regulates which gene
1
gravatar for osieman52
2.9 years ago by
osieman5220
osieman5220 wrote:

Is there a way to know which enhancer belongs to which gene or is there any database available with this type of data.

Or is it hard to tell since enhancers are cell line specific?

I basically try to annotate enhancer and gene data (= Their locations) that are located in the same Topological associated domain(TAD). I know that there are multiple gene's in one TAD. So its hard to tell which enhancer is regulating which gene or actually the promoter of that gene.

Any suggestions on this subject?

tad snp next-gen enhancer gene • 1.2k views
ADD COMMENTlink modified 2.9 years ago by YaGalbi1.5k • written 2.9 years ago by osieman5220
1
gravatar for YaGalbi
2.9 years ago by
YaGalbi1.5k
Biocomputing, MRC Harwell Institute, Oxford, UK
YaGalbi1.5k wrote:

Have a read: Is annotation of enhancers to nearest gene pointless?

ADD COMMENTlink written 2.9 years ago by YaGalbi1.5k

Thank you, I will look in to it!

ADD REPLYlink written 2.9 years ago by osieman5220
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