Question: Nucleotide diversity calculation using SNP calling or alignment ?
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gravatar for khuang1116
17 months ago by
khuang111610
khuang111610 wrote:

Hi all,

Currently, I am calculating nucleotide diversity and Tajima`s D for a population of bacterium. I have alignment on hand, but I saw lots of pipeline works on vcf. Do you know which one is better? SNP calling or alignment. Many thanks !!!!!

Best Kun

snp alignment • 926 views
ADD COMMENTlink modified 15 months ago by Biostar ♦♦ 20 • written 17 months ago by khuang111610

what is "Tajima`s" D ?

ADD REPLYlink written 17 months ago by Pierre Lindenbaum119k
1

Hi pierre. Thank you for reply. For detailed definition of Tajima`s D, please look https://en.wikipedia.org/wiki/Tajima%27s_D

ADD REPLYlink written 17 months ago by khuang111610
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