Plink. How to create small .ped file from big .ped file?
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6.7 years ago
Mr Locuace ▴ 180

Hello, let's say I have a huge ped/map file from 2500 individuals and I would like to create a smaller .ped file for 50 specific individuals. How to do it?. I have a list.txt file with the IDs of the 50 individuals. Many thanks

plink • 2.3k views
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6.7 years ago

plink --file [input filename prefix] --keep list.txt --recode --out [output filename prefix]

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