I need to derive the phylogenetic tree for a group of sequences. I am using MUSCLE to perform sequence alignment. The output of MUSCLE is a sequence aligned file which has the following header
MUSCLE (3.8) multiple sequence alignment
Now to build the tree, I am using FastTree. I pass the following command
FastTree PATH_TO_ALIGNMENT_FILE > PATH_TO_TREE_FILE
which results in the below error
FastTree Version 2.1.10 SSE3 Alignment: ../muscle/b1300dc46e02615c56cd762b141547c0.muscle Amino acid distances: BLOSUM45 Joins: balanced Support: SH-like 1000 Search: Normal +NNI +SPR (2 rounds range 10) +ML-NNI opt-each=1 TopHits: 1.00*sqrtN close=default refresh=0.80 ML Model: Jones-Taylor-Thorton, CAT approximation with 20 rate categories Error parsing header line:MUSCLE (3.8) multiple sequence alignment
Is there a workaround for this error?
File generated by MUSCLE : https://drive.google.com/open?id=13Id1UqBtaLGT7HdK8_tb-X5DuFPchy-y