Question: Detection of chimeric / fusion transcript using nanopore long reads
4
gravatar for Nicolas Rosewick
2.6 years ago by
Belgium, Brussels
Nicolas Rosewick8.8k wrote:

Hi,

I've some Direct RNA and cDNA nanopore sequencing and would like to detect some chimeric transcript. For now I aligned the reads using minimap2 and the results are quiet nice. Looking in the literature there is no current tools to perform long read fusion detection. Any idea ?

nanopore chimeric • 1.3k views
ADD COMMENTlink written 2.6 years ago by Nicolas Rosewick8.8k
1

Hello Nicolas! Any luck with this? I am in the same place right now (by the way, did you use total or polyA RNA for your sequencing)?

Thanks,

Peny

ADD REPLYlink written 2.1 years ago by pennakiza50
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