Question: Detection of chimeric / fusion transcript using nanopore long reads
gravatar for Nicolas Rosewick
2.6 years ago by
Belgium, Brussels
Nicolas Rosewick8.8k wrote:


I've some Direct RNA and cDNA nanopore sequencing and would like to detect some chimeric transcript. For now I aligned the reads using minimap2 and the results are quiet nice. Looking in the literature there is no current tools to perform long read fusion detection. Any idea ?

nanopore chimeric • 1.3k views
ADD COMMENTlink written 2.6 years ago by Nicolas Rosewick8.8k

Hello Nicolas! Any luck with this? I am in the same place right now (by the way, did you use total or polyA RNA for your sequencing)?



ADD REPLYlink written 2.1 years ago by pennakiza50
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1606 users visited in the last hour