Question: Any techniques faster than Breakdancer?
0
gravatar for boyu93
12 months ago by
boyu9310
boyu9310 wrote:

I have been using Breakdancer for structural variant detection, but it is running so slow, which takes more than 30 hours for a pair of tumor/normal samples as to WGS data. Are there any other methods which can do similar stuff but run faster? Thanks,

ADD COMMENTlink modified 11 months ago by Eric T.2.3k • written 12 months ago by boyu9310

That's what I want to find in this link, a compile of SV caller packages. Thanks a lot natasha.

ADD REPLYlink written 12 months ago by boyu9310
1
gravatar for Eric T.
11 months ago by
Eric T.2.3k
San Francisco, CA
Eric T.2.3k wrote:

Yes: try LUMPY or Manta.

ADD COMMENTlink written 11 months ago by Eric T.2.3k
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