Any techniques faster than Breakdancer?
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4.1 years ago
boyu93 ▴ 20

I have been using Breakdancer for structural variant detection, but it is running so slow, which takes more than 30 hours for a pair of tumor/normal samples as to WGS data. Are there any other methods which can do similar stuff but run faster? Thanks,

SV DNA Breakdancer structural variant • 990 views
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That's what I want to find in this link, a compile of SV caller packages. Thanks a lot natasha.

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4.1 years ago
Eric T. ★ 2.7k

Yes: try LUMPY or Manta.

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