Question: Any techniques faster than Breakdancer?
0
gravatar for boyu93
5 weeks ago by
boyu930
boyu930 wrote:

I have been using Breakdancer for structural variant detection, but it is running so slow, which takes more than 30 hours for a pair of tumor/normal samples as to WGS data. Are there any other methods which can do similar stuff but run faster? Thanks,

ADD COMMENTlink modified 4 weeks ago by Eric T.1.9k • written 5 weeks ago by boyu930

That's what I want to find in this link, a compile of SV caller packages. Thanks a lot natasha.

ADD REPLYlink written 5 weeks ago by boyu930
1
gravatar for Eric T.
4 weeks ago by
Eric T.1.9k
San Francisco, CA
Eric T.1.9k wrote:

Yes: try LUMPY or Manta.

ADD COMMENTlink written 4 weeks ago by Eric T.1.9k
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