Question: Any techniques faster than Breakdancer?
0
gravatar for boyu93
10 months ago by
boyu9310
boyu9310 wrote:

I have been using Breakdancer for structural variant detection, but it is running so slow, which takes more than 30 hours for a pair of tumor/normal samples as to WGS data. Are there any other methods which can do similar stuff but run faster? Thanks,

ADD COMMENTlink modified 10 months ago by Eric T.2.3k • written 10 months ago by boyu9310

That's what I want to find in this link, a compile of SV caller packages. Thanks a lot natasha.

ADD REPLYlink written 10 months ago by boyu9310
1
gravatar for Eric T.
10 months ago by
Eric T.2.3k
San Francisco, CA
Eric T.2.3k wrote:

Yes: try LUMPY or Manta.

ADD COMMENTlink written 10 months ago by Eric T.2.3k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 952 users visited in the last hour