Question: when doing GSEA
0
gravatar for mysskks
3.1 years ago by
mysskks0
mysskks0 wrote:

I try to do GSEA. Therefore, I downloaded mRNA data files(GCT) from firebrowse. Then i did ranknormalization by using Gene pattern. After that, i opened GCT files by using EXCEL and figure out that tumor and normal tissue RNA data are mixing in. So can i exclude the normal tissue data ?? Then do GSEA?? or Include the tumor and normal tissue RNA data. Then do GSEA??

Thank for reading my question Pleas give comments please.

rna-seq • 931 views
ADD COMMENTlink written 3.1 years ago by mysskks0
1

It is really hard for me to understand your question. Please refer to the guide on how ask questions on biostars

ADD REPLYlink written 3.1 years ago by Fabio Marroni2.6k

Thank you for your comments. I will read this and then question again.

ADD REPLYlink written 3.1 years ago by mysskks0
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