Entering edit mode
6.3 years ago
adele
▴
80
dear all
I am new in plink. can I use numeric code for genotype(0= a1a1,2= a2a2 ,3= a1a2 ,4= a2a1) in ped file? and can I use txt or csv files in plink?
thanks a lot
Did you read the plink manual?
txt
is just an extension used to denote "plain text", says nothing of the actual data format. Where do you want to use acsv
file in plink? plink take a few inputs, most of which can be generated using plink itself, so where do you want to plug a csv file in?i am reading plink manual. these custom genotype codes are produced from a simulation program and suffixes of the name of files are .txt .
thanks
You can rename the files, and maybe
sed
the genotype codes?