Question: How to separate the plasmid protein files from the main chromosomal protein file into a GenBank bacteria directory?
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gravatar for melisechaves
18 days ago by
melisechaves0 wrote:

I downloaded the proteome from 2,500 bacterial strains deposited in GenBank. Each strain has a directory, in which are files corresponding to the chromosome and plasmids, separately. However, I can only know if the file corresponds to the chromosome or plasmid if I look for the code on the GenBank website and see its description. How would a script to separate chromosomal proteins from plasmids in two files only?

ADD COMMENTlink written 18 days ago by melisechaves0

Can you paste an example of how these records appear on GenBank?; Also can you paste an example of the directory structure that you have?

ADD REPLYlink modified 17 days ago • written 17 days ago by Kevin Blighe11k
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