Question: Are there any tools which can plot biclustered heatmap on ChIP-seq. signal?
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gravatar for chiefcat
2.1 years ago by
chiefcat140
chiefcat140 wrote:

Hi all,

It is very common to perform clustering analysis when plotting ChIP-seq. signal as a heatmap (e.g. around TSS) for finding regions having similar pattern across different samples. Are there any heatmap plotting tools which can do a biclustering, which allows finding regions having dissimilar patterns?

If inputting ChIP-seq. signal calculated from tools like deepTools for biclustering, does anyone know which software or packages are suitable? (I've found some tools designed for analyzing gene expression and I'm afraid their algorithm is not suitable for ChIP-seq.)

Any suggestions are appreciated. Thanks!!

heatmap clustering chip-seq • 863 views
ADD COMMENTlink modified 2.1 years ago • written 2.1 years ago by chiefcat140

@Kevin's guides for PCA:

A: PCA plot from read count matrix from RNA-Seq
PCA in a RNA seq analysis

ADD REPLYlink written 2.1 years ago by genomax78k
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