Question: No peaks present in track when opening a .bedGraph file on IGV
0
gravatar for euanmcdonn
14 months ago by
euanmcdonn0
euanmcdonn0 wrote:

Hi all,

I'm trying to visualize some CLIP-seq data (RNase E-K12 transcriptome) on IGV as a bedGraph file, however everytime I upload it I just get a flat line with no obvious peaks. I've checked the data and although the would-be peaks are small in magnitude there is definite variation.

Whats weird is it works fine on UCSC but the problem persists for IGV.

Thanks for your time Euan McDonnell

ADD COMMENTlink modified 14 months ago by Hussain Ather910 • written 14 months ago by euanmcdonn0
0
gravatar for Hussain Ather
14 months ago by
Hussain Ather910
National Institutes of Health, Bethesda, MD
Hussain Ather910 wrote:

If you right-click on the filename on the left column, you can select "Group Autoscale" if you think the scaling is an issue.

ADD COMMENTlink written 14 months ago by Hussain Ather910
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2148 users visited in the last hour