Question: indexed human reference genome
0
gravatar for bioinfo355
3 months ago by
bioinfo3550
Pakistan
bioinfo3550 wrote:

Before alignment, bwa is used to create indexes of a genome. I have to use human genome reference seq for alignment. are indexes of human reference genome through bwa available online to download?

bwa ngs genome • 284 views
ADD COMMENTlink modified 3 months ago by Emily_Ensembl14k • written 3 months ago by bioinfo3550
4
gravatar for zhenyisong
3 months ago by
zhenyisong120
China
zhenyisong120 wrote:

iGenomes. The ftp site provides the indexed human genomes for different versions. You can also download the corresponding assembly from NCBI or ENSEMBL or UCSC. And create your own indexed genome using

bwa index -a bwtsw <your genome fasta file>
ADD COMMENTlink modified 3 months ago • written 3 months ago by zhenyisong120
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