Question: indexed human reference genome
0
gravatar for bioinfo355
15 months ago by
bioinfo3550
Pakistan
bioinfo3550 wrote:

Before alignment, bwa is used to create indexes of a genome. I have to use human genome reference seq for alignment. are indexes of human reference genome through bwa available online to download?

bwa ngs genome • 1.3k views
ADD COMMENTlink modified 15 months ago by Emily_Ensembl18k • written 15 months ago by bioinfo3550
4
gravatar for zhenyisong
15 months ago by
zhenyisong130
China
zhenyisong130 wrote:

iGenomes. The ftp site provides the indexed human genomes for different versions. You can also download the corresponding assembly from NCBI or ENSEMBL or UCSC. And create your own indexed genome using

bwa index -a bwtsw <your genome fasta file>
ADD COMMENTlink modified 15 months ago • written 15 months ago by zhenyisong130
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