Question: indexed human reference genome
gravatar for bioinfo355
14 days ago by
bioinfo3550 wrote:

Before alignment, bwa is used to create indexes of a genome. I have to use human genome reference seq for alignment. are indexes of human reference genome through bwa available online to download?

bwa ngs genome • 126 views
ADD COMMENTlink modified 13 days ago by Emily_Ensembl14k • written 14 days ago by bioinfo3550
gravatar for zhenyisong
14 days ago by
zhenyisong120 wrote:

iGenomes. The ftp site provides the indexed human genomes for different versions. You can also download the corresponding assembly from NCBI or ENSEMBL or UCSC. And create your own indexed genome using

bwa index -a bwtsw <your genome fasta file>
ADD COMMENTlink modified 14 days ago • written 14 days ago by zhenyisong120
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