Question: annotation of RRBS DMRs in RnBeads or other packages
0
gravatar for rahel14350
13 months ago by
rahel1435030
United States
rahel1435030 wrote:

I used the mean methylation value and Wilcox test to define differentially methylated regions between two groups of RRBS data. Is there any way that I could import the Granges from DMRs to RnBeads to annotate them there? Or do you have any suggestion for which package I could use only for annotation of DMRs to promotors, genes and ....!

Many thanks, Rahel

ADD COMMENTlink modified 13 months ago • written 13 months ago by rahel1435030
1

I used package annotatr and it helped me. https://bioconductor.org/packages/release/bioc/vignettes/annotatr/inst/doc/annotatr-vignette.html

ADD REPLYlink written 13 months ago by rahel1435030
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1153 users visited in the last hour