no merged gtf file after running cuffmerge

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7.8 years ago

naveenlalosharma • 0

I am analyzing the transcriptome of arabidopsis and everything worked well till the cuffmerge. After running the cuffmerge i didnt get the merged gtf file.

next-gen rna-seq RNA-Seq • 1.6k views

ADD COMMENT • link updated 7.8 years ago by GenoMax 142k • written 7.8 years ago by naveenlalosharma • 0

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Was there an error? What command did you use to run cuffmerge?

ADD REPLY • link 7.8 years ago by GenoMax 142k

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there is no error. /home/naveen/Desktop/cufflinks-2.2.1.Linux_x86_64/cuffmerge -g /home/naveen/Desktop/Tamips_transcriptome_analysis/AtRTD2_19April2016.gtf -s /home/naveen/Desktop/Tamips_transcriptome_analysis/genomeindex/Genome -p 50 /home/naveen/Desktop/Tamips_transcriptome_analysis/cuffdiff_out/assemblies.txt

ADD REPLY • link 7.8 years ago by naveenlalosharma • 0

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Did you solve the problem? I have same issue :'(

ADD REPLY • link 6.3 years ago by bioinfo ▴ 10

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