I have tumor samples (wes) gathered from different patients. All the tumors belong to the same cancer type. I would like to check the mutations in those samples, if they affect the same genes, is there a correltaion, similar mutation pattern ... etc
My question is, how can I detect the mutations in the tumor samples? Those are not germline samples, so I cannot use germline piplines. Moreover, I do not have the normal samples in order to apply the somatic pipelines.
Could anyone guide me please on what to do in this case? Many thanks in advance
p.s. I understand that your answers are for educational purposes and you hold no responsibility. I have read such disclaimers in other posts.