Question

Looking For Downloadable Mzml Files

10

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13.5 years ago

Attila Csordas ▴ 520

I'm looking for downloadable mzML (Mass Spectrometry Markup Language) files other than the ones available at the mzML 1.1.0 Specification site http://www.psidev.info/index.php?q=node/257

mass-spec proteomics • 4.9k views

ADD COMMENT • link updated 13.3 years ago by Steffen ▴ 20 • written 13.5 years ago by Attila Csordas ▴ 520

0

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forgot to say that I'm looking for the current version 1.1.0 files

ADD REPLY • link 13.5 years ago by Attila Csordas ▴ 520

score 7 · Answer 1 · 2010-10-18

7

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13.5 years ago

Simon Cockell 7.4k

Proteome Commons stores a pretty large repository of publicly available data:

https://proteomecommons.org/data-browse.jsp

Searching by entering 'mzML' in the 'Description' box in advanced search returns just 9 data sets, but I guess it's 9 you didn't have before...

ADD COMMENT • link 13.5 years ago by Simon Cockell 7.4k

score 2 · Answer 2 · 2010-10-19

You can check the SVN of the reference implementations for test data, although there may be some overlap with the ones from the mzML spec site, especially for pwiz:

http://open-ms.svn.sourceforge.net/viewvc/open-ms/OpenMS/source/TEST/data/

http://proteowizard.svn.sourceforge.net/viewvc/proteowizard/trunk/pwiz/example_data/