Question: Exact match with query architecture option for local version of HMMER
0
gravatar for Sej Modha
18 months ago by
Sej Modha4.3k
Glasgow, UK
Sej Modha4.3k wrote:

Hello Biostars,

I am trying to search a customised HMM profile against the refseq protein databases using hmmsearch (HMMER 3.1b1) locally on my computer. I have performed a similar search against the UniProt DB available on https://www.ebi.ac.uk/Tools/hmmer/search/hmmsearch. The online version of the HMMER allows me to filter the sequences that match the exact query architecture, however, I am unable to find a similar option that allows me to filter the results obtained with local hmmsearch.

Is it possible to filter results that match exact query architecture in the local hmmsearch?

hmmer hmmsearch • 477 views
ADD COMMENTlink modified 18 months ago • written 18 months ago by Sej Modha4.3k
0
gravatar for Sej Modha
18 months ago by
Sej Modha4.3k
Glasgow, UK
Sej Modha4.3k wrote:

I have concluded that this is feature is not available in the current version of the local HMMER tool.

ADD COMMENTlink modified 18 months ago • written 18 months ago by Sej Modha4.3k
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