Hi, I would like to use SAFE clustering on my single-cell dataset, but it seems the scripts are bugged. I tried to run the example provided on SAFE's website, but I'm getting this error.
Error in individual_clustering(inputTags = expr.mat, SEED = 123) :
(list) object cannot be coerced to type 'double' In addition: Warning message: 'newSCESet' is deprecated. Use 'SingleCellExperiment' instead. See help("Deprecated")
Here is the code I ran in order to obtain this error:
expr.mat <- read.csv("/home/snin/workspace/SAFE_clustering/expression_matrix.csv", header = T) rownames(expr.mat) <- expr.mat[,1] expr.mat <- expr.mat[,-1] cluster.result <- individual_clustering(inputTags=expr.mat, SEED=123)
Can you maybe advise me to resolve this issue?
Have a nice day.