Question: How can I calculate and compare intra-cluster correlation for each GO term and pathway?
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gravatar for tfhahn
15 months ago by
tfhahn50
tfhahn50 wrote:

How can I calculate and compare intra-cluster correlation for each GO term and pathway?

I want for all the genes, which belong to the same GO-term, calculate a similarity score. Each GO term can be considered as a cluster. How do I calculate correlation of the time series trajectories for a group consisting of more than 2 genes? In other words, how can I calculate the correlation within a gene cluster? Which clustering algorithm should I use to infer gene function from time series trajectory similarities? Please provide long preferentially to Python code. I am especially interested in yeast data.

gene • 511 views
ADD COMMENTlink modified 15 months ago • written 15 months ago by tfhahn50
1

Hi Thomas, Kevin here, is this connect to your PhD project? I have received your emails

ADD REPLYlink modified 15 months ago • written 15 months ago by Kevin Blighe42k

Yes. I need this for my dissertation. Could you please help with that? I replied to your email but my reply did not reach you because it came back as not deliverable. Please get in touch with me by voice if you have time.

ADD REPLYlink written 15 months ago by tfhahn50
1

I have your email, and Skype messages. We should choose a specific time to call tomorrow. I tried to call you a couple of times in the past but there was no response

ADD REPLYlink written 15 months ago by Kevin Blighe42k
0
gravatar for tfhahn
15 months ago by
tfhahn50
tfhahn50 wrote:

If I could get it published it would count towards the dissertation novelty requirement. If I want I can focus my dissertation on it. When will you call me?

ADD COMMENTlink written 15 months ago by tfhahn50
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