Question: How can I calculate and compare intra-cluster correlation for each GO term and pathway?
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gravatar for tfhahn
2.3 years ago by
tfhahn50
tfhahn50 wrote:

How can I calculate and compare intra-cluster correlation for each GO term and pathway?

I want for all the genes, which belong to the same GO-term, calculate a similarity score. Each GO term can be considered as a cluster. How do I calculate correlation of the time series trajectories for a group consisting of more than 2 genes? In other words, how can I calculate the correlation within a gene cluster? Which clustering algorithm should I use to infer gene function from time series trajectory similarities? Please provide long preferentially to Python code. I am especially interested in yeast data.

gene • 747 views
ADD COMMENTlink modified 2.3 years ago • written 2.3 years ago by tfhahn50
1

Hi Thomas, Kevin here, is this connected to your PhD project? I have received your emails

ADD REPLYlink modified 5 months ago • written 2.3 years ago by Kevin Blighe60k

Yes. I need this for my dissertation. Could you please help with that? I replied to your email but my reply did not reach you because it came back as not deliverable. Please get in touch with me by voice if you have time.

ADD REPLYlink written 2.3 years ago by tfhahn50
1

I have your email, and Skype messages. We should choose a specific time to call tomorrow. I tried to call you a couple of times in the past but there was no response

ADD REPLYlink written 2.3 years ago by Kevin Blighe60k

If I could get it published it would count towards the dissertation novelty requirement. If I want I can focus my dissertation on it. When will you call me?

ADD REPLYlink written 2.3 years ago by tfhahn50
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