Question: Tcga molecular classification
0
gravatar for xmoon0609
2.1 years ago by
xmoon06090
xmoon06090 wrote:

Hello, I am focusing on the stomach cancer data from TCGA, I hope someone could know where can I find patient's molecular classification? I mean TCGA found stomach cancer patients can be classified into EBV, MSI, GS, and CIN four subgroup, where can I find which subgroup an identical patient belonged to in the TCGA cohort? I downloaded the clinical information but I can not find T_T highly appreciated!

assembly • 805 views
ADD COMMENTlink modified 2.1 years ago by phiphi80900 • written 2.1 years ago by xmoon06090

It may simply not be available - I'm not sure. For things like breast and endometrial cancer, which I have analysed, I do not believe that the TCGA record these types of molecular parameters. The researchers analysing the data certainly do have them recorded, but perhaps not explicitly assigned a molecular classifier to each patient in their published works.

You should nevertheless check the clinical data on the TCGA GDC Legacy Archive

They have a wealth of clinical information there, including pathology slide images in SVS format.

Kevin

ADD REPLYlink modified 2.1 years ago • written 2.1 years ago by Kevin Blighe54k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1012 users visited in the last hour