CUFFDIFF giving empty CDS.DIFF files
0
0
Entering edit mode
4.3 years ago
Rose ▴ 10

Hi,

I ran cuffdiff using c.elegans( WBcel235) gtf file on two groups of bam, ech having three replicates. The output produced by cuffdiff had empty cds.diff, cds.count_tracking and cds.fpkm_tracking. I have checked several sites regarding this issue and found that, the gtf file suppied should contain tss_id and p_id attributes. However, I re-ran cuffdiff with gtf file having both the attributes and again the outputs of cds files were empty. Other outputs seemed normal.

Can anyone help me with this?

cuffdiff RNA-Seq c.elegans • 947 views
ADD COMMENT

Login before adding your answer.

Traffic: 2193 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6