Decompress .bwt file and .sa file
0
0
Entering edit mode
7.3 years ago
mrm259 • 0

Hi,

After indexing I got files. I need to use .bwt file and .sa file in my algorithm.

My question is: is there a way to decompress .bwt file and .sa file ?

I tried zlib.decompress it doesn't work.

Any help will be appreciated.

bwa alignment bwt sa • 2.3k views
ADD COMMENT
1
Entering edit mode

But why would you want to do that?

It's also not just a compression, it's a suffix array/transformed/indexed genome.

ADD REPLY
0
Entering edit mode

I need to use BWT and SA in my algorithm that why I need to decompress them because in the first step to produce BWT and SA: we have to form all rotations. All these rotations took too much memory that why I prefer to produce BWT and SA by using BWA. Any idea how to use BWT and SA ? Or what is the best way to produce BWT ? better than the naive version of the BWT that forms all rotations.

ADD REPLY
0
Entering edit mode

Hello mrm259!

It appears that your post has been cross-posted to another site: https://bioinformatics.stackexchange.com/questions/3506/decompress-bwt-file-and-sa-file

This is typically not recommended as it runs the risk of annoying people in both communities.

ADD REPLY

Login before adding your answer.

Traffic: 2265 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6