Question: SNP Positioning on a Gene
0
gravatar for kavyajayanthan
16 months ago by
kavyajayanthan0 wrote:

I need to plot SNPs on a particular gene and visualize it (like a gene map), just with better clarity. I tried ensembl and UCSC Genome, but is there some other more efficient way?

snp gene • 371 views
ADD COMMENTlink modified 16 months ago by colindaven1.4k • written 16 months ago by kavyajayanthan0

What do you mean by efficient way? What is the format of your list of SNPs? Is it a BED file?

ADD REPLYlink written 16 months ago by Denise - Open Targets5.0k
2
gravatar for colindaven
16 months ago by
colindaven1.4k
Hannover Medical School
colindaven1.4k wrote:

Have a look at snpEff or Ensembl VEP

ADD COMMENTlink written 16 months ago by colindaven1.4k
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