Question: Calculate Mean absolute allele frequency difference from MS output
1
gravatar for Rubal
2.5 years ago by
Rubal330
Germany
Rubal330 wrote:

Does anyone know of a tool that can take MS coalescent simulator output format as input and calculate the mean absolute allele frequency different between two populations for the simulated loci?

I've simulated 100 10kb regions of two divergent populations and would like to calculate the absolute allele frequency difference at each polymorphic site and then calculate the mean across the locus. Just wondering if a tool that can do this or something similar already exists?

Thanks in advance.

ADD COMMENTlink written 2.5 years ago by Rubal330

I feel that it may be a better idea to contact the author (email on publication page): https://academic.oup.com/bioinformatics/article/18/2/337/225783

If you get an answer, please post back here.

ADD REPLYlink written 2.5 years ago by Kevin Blighe63k
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