GEOquery library in R I have managed to download 850 samples I am interested in. I used the following code for this:
x <- as.list(scan("fileWithGEOsampleAccesionCodes.txt", what ="" , sep = "" ))
I have read the CEL files into an affyBatch using - >
r <- ReadAffy(celfile.path = pathToFiles,compress = TRUE)
I want to look which micro-array platform is being for each sample. With micro-array platform I mean -->
, also know as
How can I do this using the data I already have or using the accessioncodes? Basically I want to know the annotation for each sample (.CEL file) .
Thank you in advance!