Find "domains" in a protein sequence

Question

[DanielC]

Dear All,

I have a protein sequence "NP_001318.1". I would really appreciate answer to this query below:

a) Find "domains" in the protein sequence?

Thanks much, DK

Answer 1

[lieven.sterck]

Running it through InterPro will give you the domains present in the sequence

An alternative is doing a blast on NCBI webblast which will also indicate you the domains (from CDD in that case)

Answer 2

[arta]

To me it looks an assignment, yet, go to NCBI and paste the code "NP_001318.1", on the right side under the "Analyze this sequence " section, click the "Identify Conserved Domains" and get your answer.