Question: BaseQRankSum and FS
gravatar for Tania
6 months ago by
Tania120 wrote:

Hi All

Can anyone give me a roughly cutoff for BaseQRankSum and FS in vcf? I need to know a hint about what is too low to accept or what is a good? Something like this, I can't interpret:

BaseQRankSum=1.875;DP=1987;Dels=0.00;FS=3.500;HaplotypeScore=1.1051;InbreedingCoeff=-0.0043;MLEAC=3;MLEAF=0.019;MQ0=1;MQ=58.73;MQRankSum=0.871;QD=13.15;ReadPosRankSum=-0.989;SOR=1.630        GT:AD:DP:GQ:PL  0/1:7,14:21:99:383,0,139


artifacts vcf • 340 views
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