How to cluster single cell data using list of markers?
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3.1 years ago
John ▴ 220

Hi,

I have a (single cell)) RNA Seq data of Marker X expressed by 100 cells and also I have markers for its subgroups (Marker list-1,2,3,4,5). How can I subgroup them based on these marker's expression!

I ran RSEM and Have expected count,TPM,FPKM for all the 100 sequences!

Please help, Thanks!

RNA-Seq r rna-seq R • 1.3k views
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You can try SEURAT , MONOCLE. There could be much more awesome-single-cell

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