I am doing RNA-Seq analysis of Schmidtea mediterranea(fresh water planaria). The major problem is annotation. How do I get any useful gene data from the up and down regulated hits that I got (or just assuming I have a subset of "mkids"). I used annotation files from the Smed database which has only gene predictions(from maker) and the annotation from wormbase has only "mk" ids . I have used genomes from worm base and SmedDB.Also how can I get GO enrcihment and pathway enrichment for the hit genes(mkids or maker gene predictions)?
Question: Schmidtea mediterranea annotation problems
6 months ago by
kalmeshv83 • 0
kalmeshv83 • 0 wrote:
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