Question: Fungal genome annotation with or without RNA seq data
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gravatar for msobol
13 months ago by
msobol10
msobol10 wrote:

Hi,

I have been looking to use Maker 2 for eukaryotic genome annotation. I am a little lost on if I need to provide rna seq/EST data in order for the annotation to work? I do not have this data, unfortunately.

Thanks, Morgan

rna-seq fungi annotation genome • 443 views
ADD COMMENTlink written 13 months ago by msobol10

RNAseq / EST data from the same species will improve the quality of the annotation. You can use EST / transcripts / protein from other - better if closely related - species.

ADD REPLYlink written 13 months ago by h.mon24k
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