Question: Fungal genome annotation with or without RNA seq data
gravatar for msobol
23 months ago by
msobol20 wrote:


I have been looking to use Maker 2 for eukaryotic genome annotation. I am a little lost on if I need to provide rna seq/EST data in order for the annotation to work? I do not have this data, unfortunately.

Thanks, Morgan

rna-seq fungi annotation genome • 741 views
ADD COMMENTlink written 23 months ago by msobol20

RNAseq / EST data from the same species will improve the quality of the annotation. You can use EST / transcripts / protein from other - better if closely related - species.

ADD REPLYlink written 23 months ago by h.mon29k
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