Question: [FastML] Problem with input newick tree
gravatar for jo.bac
9 months ago by
jo.bac0 wrote:

Dear forumers,

I have a problem using FastML. I am using it from the command line However, the program terminates and returns :

sh: 1: Syntax error: word unexpected (expecting ")")
FASTML failed to run, one of the files seq.marginal.txt or prob.marginal.txt were not created...

I can't see any mistake in my input files so, any help would be a blessing as I am totally stuck.

Thank you very much !

software error • 198 views
ADD COMMENTlink modified 9 months ago by genomax59k • written 9 months ago by jo.bac0

Sometimes the Newick format has some extra information that not all software likes, like Bootstrap values etc.

Does your tree look like ((A:1, B:1), C:1)? Have you tried deleting the numbers?

ADD REPLYlink written 9 months ago by Philipp Bayer5.8k
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