Question: GRCh37 -> GRCh38 alternative loci index conversion
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gravatar for lefthandgergo
17 months ago by
lefthandgergo10 wrote:

Hi there!

I'd like to find alternative loci sections (eg. chr6_cox_hap2) of the GRCh37 human reference genome in GRCh38. I've already found some tools to perform position conversions between the two assemblies (LiftOver and NCBI Remap), but not for these alternative sequence names. Do you have any idea how to solve this problem? Thanks!

Gergo

reference genome bam assembly • 573 views
ADD COMMENTlink written 17 months ago by lefthandgergo10
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