Converting .hic file into edge list
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3.6 years ago
neeteshp • 0

Dear All, I want to make a edge list using .hic file whose come through hicup and juicer tool. I have no idea how to make a edge list using .hic. If anyone have any idea please share to me. Thanks for help.

HiC • 1.3k views
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How is the data arranged in a HIC file? - can you paste it?

Keep in mind that an edge list can be as simple as a 2-column table, with edges as rows. Knowing your intended end-application (e.g., CytoScape or igraph) will help, as that will dictate the exact format for your edge list.

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