WESA job submission issue
1
0
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6.0 years ago
ajgeorge • 0

Hello,

I am trying to submit jobs to the WESA server in batch mode as per the steps given here. The problem I face is that, despite the WESA-submit.py script executing without errors, the $1.html file does not contain any relevant information. The file contains only empty html tags such as

<html>
<head>
    <title>WESA</title> 
</head>
<body>

I haven't received an email for the job which further confirms that the job did not run successfully. Any help in resolving this would be greatly appreciated !

WESA sequence submission error python • 906 views
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0
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Your best bet is to contact the tool owners. Test data submitted to the server appears to be working (there is a 15 min wait to get results).

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0
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Thanks @genomax for your response! I have written to the maintainers of the tool as well. If I may know, was your attempt at submitting test data to the server happen via the web interface or through the python scripts ? I am able to get successful results while submitting jobs via the web interface as well and the problem is only with batch submissions.

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0
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Are you exceeding any job limits (e.g. max 2000 aa)? That probably applies to batch submissions too.

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0
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Not at all. The longest sequence I have is 527aa long and for my test run I am only trying to submit a single sequence. The same sequences posted individually on the web interface work without issues.

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1
Entering edit mode
6.0 years ago
ajgeorge • 0

The issue is sorted ! The problem was that my sequence file had the ">" symbol as the first line since it was in the FASTA format. A slight modification of the WESA-submit.py script to ignore the ">" symbol was the solution.

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