I'm new with using MACS and HOMER.
I have created a bed file using MACS, and got 5 columns, for example:
chr1 770811 771252 MACS_peak_1 93.92 chr1 851512 851790 MACS_peak_2 57.31 chr1 920907 921486 MACS_peak_3 207.37 chr1 946784 946982 MACS_peak_4 73.24
Does anyone knows how can I create a column that contains the Unique Peak ID for HOMER analysis?
Also, What is the difference between using
findMotifsGenome.pl ? besides the fact that the first uses Unique Peak ID and the second uses genomic positions?
Appreciate your help!