How to visualize a tree with ancestral state information
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6.3 years ago
Cacau ▴ 520

Is there anybody who may be able to tell me how a tree with ancestral state information can be visualized such as the following one? My data has three states, I have calculated their probabilities for each node using bayestrait already. What software shall I use?

enter image description here

gene • 1.8k views
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6.3 years ago
Biojl ★ 1.7k

If you want to plot a tree with annotation in an automated way your best bet is ETE: http://etetoolkit.org/

You can do almost anything you want with a tree programmaticly. Is python based.

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