how to produce a cluster plot of rna-seq + chipseq data?

Question

[Zee_S]

Hello everyone,

I would like to create a correlation plot of some RNAseq data and ChIPseq data, would you happen to have any ideas on a good pipeline to do this, and what kind of normalization need to be done beforehand?

I just want do a cluster analyses of the two datasets instead of using gene annotations to look at enrichment over TSS.

and what do you do with zero reads bins from rnaseq data?

Thanks for your help!