Question: conversion from CEL file to PLINK format (.map, .ped)
gravatar for more.u88
2.7 years ago by
more.u8810 wrote:

Hi! I'm writing this message because I'm not an expert to treat genetical data and since I want to perform an analysis using PLINK software I would like to ask you how I can convert CEL files to the map and ped format that I can use in PLINK. I'm searching online but I'm not understanding. Also, someone could explain me better the structure of CEL files or where I can find some good references to understand better.

Thank you very much

snp genome • 1.9k views
ADD COMMENTlink modified 12 months ago by freeseek100 • written 2.7 years ago by more.u8810

Relevant post at bioconductor:


ADD REPLYlink modified 2.7 years ago • written 2.7 years ago by zx87549.9k
gravatar for freeseek
12 months ago by
freeseek100 wrote:

You can use the affy2vcf bcftools plugin to convert the apt-probeset-genotype output to VCF and then use best practices to convert the VCF output to PLINK. I believe this is the fastest way

ADD COMMENTlink written 12 months ago by freeseek100
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2390 users visited in the last hour